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1

Non-additive Effects in Genomic Selection

Varona, Luis, Legarra, Andres, Toro, Miguel A., Vitezica, Zulma G.

Journal:

Frontiers in Genetics

Year:

2018

Language:

english

File:

PDF, 543 KB

english, 2018

2

Single-Step Genomic and Pedigree Genotype × Environment Interaction Models for Predicting Wheat Lines in International Environments

Pérez-Rodríguez, Paulino, Crossa, José, Rutkoski, Jessica, Poland, Jesse, Singh, Ravi, Legarra, Andrés, Autrique, Enrique, Campos, Gustavo de los, Burgueño, Juan, Dreisigacker, Susanne

Journal:

The Plant Genome

Year:

2017

Language:

english

File:

PDF, 835 KB

english, 2017

3

Does probabilistic modelling of linkage disequilibrium evolution improve the accuracy of QTL location in animal pedigree?

Christine Cierco-Ayrolles, Sébastien Dejean, Andrés Legarra, Hélène Gilbert, Tom Druet, Florence Ytournel, Delphine Estivals, Naïma Oumouhou, Brigitte Mangin

Journal:

Genetics Selection Evolution

Year:

2010

Language:

english

File:

PDF, 334 KB

english, 2010

4

GWAS by GBLUP: Single and Multimarker EMMAX and Bayes Factors, with an Example in Detection of a Major Gene for Horse Gait

Legarra, Andres, Ricard, Anne, Varona, Luis

Journal:

G3 Genes|Genome|Genetics

Year:

2018

Language:

english

File:

PDF, 1008 KB

english, 2018

5

Multivariate genomic model improves analysis of oil palm (Elaeis guineensisJacq.) progeny tests

Marchal, Alexandre, Legarra, Andrés, Tisné, Sébastien, Carasco-Lacombe, Catherine, Manez, Aurore, Suryana, Edyana, Omoré, Alphonse, Nouy, Bruno, Durand-Gasselin, Tristan, Sánchez, Leopoldo, Bouvet, Je

Journal:

Molecular Breeding

Year:

2016

Language:

english

File:

PDF, 559 KB

english, 2016

6

Weighting Strategies for Single-Step Genomic BLUP: An Iterative Approach for Accurate Calculation of GEBV and GWAS

Zhang, Xinyue, Lourenco, Daniela, Aguilar, Ignacio, Legarra, Andres, Misztal, Ignacy

Journal:

Frontiers in Genetics

Year:

2016

Language:

english

File:

PDF, 2.89 MB

english, 2016

7

331 Efficient quality control methods for genomic and pedigree data used in routine genomic evaluation

Masuda, Yutaka, Legarra, Andres, Aguilar, Ignacio, Misztal, Ignacy

Journal:

Journal of Animal Science

Year:

2019

File:

PDF, 97 KB

2019

8

Single-marker and multi-marker mixed models for polygenic score analysis in family-based data

Nora Bohossian,Mohamad Saad,Andrés Legarra,Maria Martinez

Journal:

BMC Proceedings

Year:

2014

Language:

english

File:

PDF, 229 KB

english, 2014

9

Semi-parametric estimates of population accuracy and bias of predictions of breeding values and future phenotypes using the LR method

Legarra, Andres, Reverter, Antonio

Journal:

Genetics Selection Evolution

Year:

2018

Language:

english

File:

PDF, 2.54 MB

english, 2018

10

Genetic parameters for growth and faecal worm egg count followingHaemonchus contortusexperimental infestations using pedigree and molecular information

Assenza, Fabrizio, Elsen, Jean-Michel, Legarra, Andrés, Carré, Clément, Sallé, Guillaume, Robert-Granié, Christèle, Moreno, Carole R

Journal:

Genetics Selection Evolution

Year:

2014

Language:

english

File:

PDF, 235 KB

english, 2014

11

A comparison of methods for whole-genome QTL mapping using dense markers in four livestock species

Legarra, Andres, Croiseau, Pascal, Sanchez, Marie, Teyssèdre, Simon, Sallé, Guillaume, Allais, Sophie, Fritz, Sébastien, Moreno, Carole, Ricard, Anne, Elsen, Jean-Michel

Journal:

Genetics Selection Evolution

Year:

2015

Language:

english

File:

PDF, 1.82 MB

english, 2015

12

Genetic evaluation with major genes and polygenic inheritance when some animals are not genotyped using gene content multiple-trait BLUP

Legarra, Andrés, Vitezica, Zulma G.

Journal:

Genetics Selection Evolution

Year:

2015

Language:

english

File:

PDF, 1.26 MB

english, 2015

13

Genomic selection for carrier-state resistance in chicken commercial lines

Fanny Calenge, Andres Legarra, Catherine Beaumont

Journal:

BMC Proceedings

Year:

2011

Language:

english

File:

PDF, 211 KB

english, 2011

14

Genetic Variation in the Social Environment Contributes to Health and Disease

Baud, Amelie, Mulligan, Megan K., Casale, Francesco Paolo, Ingels, Jesse F., Bohl, Casey J., Callebert, Jacques, Launay, Jean-Marie, Krohn, Jon, Legarra, Andres, Williams, Robert W., Stegle, Oliver, F

Journal:

Year:

2017

Language:

english

File:

PDF, 2.71 MB

english, 2017

15

Evaluating Sequence-Based Genomic Prediction with an Efficient New Simulator

Pérez-Enciso, Miguel, Forneris, Natalia, de los Campos, Gustavo, Legarra, Andrés

Journal:

Year:

2017

Language:

english

File:

PDF, 1.01 MB

english, 2017

16

A fast indirect method to compute functions of genomic relationships concerning genotyped and ungenotyped individuals, for diversity management

Colleau, Jean-Jacques, Palhière, Isabelle, Rodríguez-Ramilo, Silvia T., Legarra, Andres

Journal:

Genetics Selection Evolution

Year:

2017

Language:

english

File:

PDF, 1.26 MB

english, 2017

17

Linear models for joint association and linkage QTL mapping

Andrés Legarra, Rohan L Fernando

Journal:

Genetics Selection Evolution

Year:

2009

Language:

english

File:

PDF, 404 KB

english, 2009

18

A note on the rationale for estimating genealogical coancestry from molecular markers

Miguel Ángel Toro, Luis Alberto García-Cortés, Andrés Legarra

Journal:

Genetics Selection Evolution

Year:

2011

Language:

english

File:

PDF, 359 KB

english, 2011

19

Fine tuning genomic evaluations in dairy cattle through SNP pre-selection with the Elastic-Net algorithm

CROISEAU, PASCAL, LEGARRA, ANDRÉS, GUILLAUME, FRANÇOIS, FRITZ, SÉBASTIEN, BAUR, AURÉLIA, COLOMBANI, CARINE, ROBERT-GRANIÉ, CHRISTÈLE, BOICHARD, DIDIER, DUCROCQ, VINCENT

Journal:

Genetics Research

Year:

2011

Language:

english

File:

PDF, 189 KB

english, 2011

20

Sequence- vs. chip-assisted genomic selection: accurate biological information is advised

Pérez-Enciso, Miguel, Rincón, Juan C, Legarra, Andrés

Journal:

Genetics Selection Evolution

Year:

2015

Language:

english

File:

PDF, 1.01 MB

english, 2015

21

Incorporation of causative quantitative trait nucleotides in single-step GBLUP

Fragomeni, Breno O., Lourenco, Daniela A. L., Masuda, Yutaka, Legarra, Andres, Misztal, Ignacy

Journal:

Genetics Selection Evolution

Year:

2017

Language:

english

File:

PDF, 1.01 MB

english, 2017

22

Single-Step Genomic Evaluations from Theory to Practice: Using SNP Chips and Sequence Data in BLUPF90

Lourenco, Daniela, Legarra, Andres, Tsuruta, Shogo, Masuda, Yutaka, Aguilar, Ignacio, Misztal, Ignacy

Journal:

Year:

2020

File:

PDF, 365 KB

2020

23

Theoretical and empirical comparisons of expected and realized relationships for the X-chromosome

Druet, Tom, Legarra, Andres

Journal:

Genetics Selection Evolution

Year:

2020

File:

PDF, 1.75 MB

2020

24

Genome-wide association mapping including phenotypes from relatives without genotypes in a single-step (ssGWAS) for 6-week body weight in broiler chickens

Wang, Huiyu, Misztal, Ignacy, Aguilar, Ignacio, Legarra, Andres, Fernando, Rohan L., Vitezica, Zulma, Okimoto, Ron, Wing, Terry, Hawken, Rachel, Muir, William M.

Journal:

Frontiers in Genetics

Year:

2014

Language:

english

File:

PDF, 1.32 MB

english, 2014

25

Validation of models for analysis of ranks in horse breeding evaluation

Anne Ricard, Andrés Legarra

Journal:

Genetics Selection Evolution

Year:

2010

Language:

english

File:

PDF, 373 KB

english, 2010

26

Influence of epistasis on response to genomic selection using complete sequence data

Forneris, Natalia S., Vitezica, Zulma G., Legarra, Andres, Pérez-Enciso, Miguel

Journal:

Genetics Selection Evolution

Year:

2017

Language:

english

File:

PDF, 2.29 MB

english, 2017

27

Current status of genomic evaluation

Misztal, Ignacy, Lourenco, Daniela, Legarra, Andres

Journal:

Journal of Animal Science

Year:

2020

File:

PDF, 865 KB

2020

28

Genomic selection models for directional dominance: an example for litter size in pigs

Varona, Luis, Legarra, Andrés, Herring, William, Vitezica, Zulma G.

Journal:

Genetics Selection Evolution

Year:

2018

Language:

english

File:

PDF, 1.81 MB

english, 2018

29

Imputation of genotypes in Danish purebred and two-way crossbred pigs using low-density panels

Xiang, Tao, Ma, Peipei, Ostersen, Tage, Legarra, Andres, Christensen, Ole F

Journal:

Genetics Selection Evolution

Year:

2015

Language:

english

File:

PDF, 1.20 MB

english, 2015

30

Metafounders are related toFstfixation indices and reduce bias in single-step genomic evaluations

Carolina A. Garcia-Baccino,Andres Legarra…

Journal:

Genetics Selection Evolution

Year:

2017

Language:

english

File:

PDF, 1.79 MB

english, 2017

31

Single Step, a general approach for genomic selection

Legarra, Andres, Christensen, Ole F., Aguilar, Ignacio, Misztal, Ignacy

Journal:

Livestock Science

Year:

2014

Language:

english

File:

PDF, 626 KB

english, 2014

32

Accuracy of estimated breeding values with genomic information on males, females, or both: an example on broiler chicken

Lourenco, Daniela A. L., Fragomeni, Breno O., Tsuruta, Shogo, Aguilar, Ignacio, Zumbach, Birgit, Hawken, Rachel J., Legarra, Andres, Misztal, Ignacy

Journal:

Genetics Selection Evolution

Year:

2015

Language:

english

File:

PDF, 871 KB

english, 2015

33

Crystal structure of K 0.75 [Fe II3.75 Fe III1.25 (HPO 3 ) 6 ]·0.5H 2 O, an open-framework iron phosphite with mixed-valent Fe II /Fe III ions

Larrea, Edurne S., Mesa, José Luis, Legarra, Estibaliz, Aguayo, Andrés Tomás, Arriortua, Maria Isabel

Journal:

Acta Crystallographica Section E Crystallographic Communications

Year:

2016

Language:

english

File:

PDF, 456 KB

english, 2016

34

22 Accuracy of indirect predictions for large datasets based on prediction error covariance of SNP effects from single-step GBLUP

Garcia, Andre, Aguilar, Ignacio, Legarra, Andres, Miller, Stephen P, Tsuruta, Shogo, Misztal, Ignacy, Lourenco, Daniela

Journal:

Journal of Animal Science

Year:

2020

File:

PDF, 108 KB

2020

35

Purebred and Crossbred Genomic Evaluation and Mate Allocation Strategies To Exploit Dominance in Pig Crossbreeding Schemes

GonzÃ¡lez-DiÃ©guez, David, Tusell, Llibertat, Bouquet, Alban, Legarra, Andres, Vitezica, Zulma G.

Journal:

G3 Genes|Genome|Genetics

Year:

2020

File:

PDF, 1.30 MB

2020

36

Genetic evaluation for three-way crossbreeding

Christensen, Ole F., Legarra, Andres, Lund, Mogens S., Su, Guosheng

Journal:

Genetics Selection Evolution

Year:

2015

Language:

english

File:

PDF, 1.40 MB

english, 2015

37

PSXII-37 Validation of single-step GBLUP genomic predictions from threshold models using the linear regression method: an application in chicken mortality

Bermann, Matias, Legarra, Andres, Hollifield, Mary Kate, Masuda, Yutaka, Lourenco, Daniela, Misztal, Ignacy

Journal:

Journal of Animal Science

Year:

2020

File:

PDF, 763 KB

2020

38

Improved Lasso for genomic selection

LEGARRA, ANDRÉS, ROBERT-GRANIÉ, CHRISTÈLE, CROISEAU, PASCAL, GUILLAUME, FRANÇOIS, FRITZ, SÉBASTIEN

Journal:

Genetics Research

Year:

2011

Language:

english

File:

PDF, 288 KB

english, 2011

39

Short communication: Accounting for new mutations in genomic prediction models

Casellas, Joaquim, Esquivelzeta, Cecilia, Legarra, Andrés

Journal:

Journal of Dairy Science

Year:

2013

Language:

english

File:

PDF, 163 KB

english, 2013

40

Fine-mapping quantitative trait loci with a medium density marker panel: efficiency of population structures and comparison of linkage disequilibrium linkage analysis models

ROLDAN, DANA L, GILBERT, HÉLÈNE, HENSHALL, JOHN M, LEGARRA, ANDRÉS, ELSEN, JEAN-MICHEL

Journal:

Genetics Research

Year:

2012

Language:

english

File:

PDF, 223 KB

english, 2012

41

Genomic BLUP including additive and dominant variation in purebreds and F1 crossbreds, with an application in pigs

Vitezica, Zulma G., Varona, Luis, Elsen, Jean-Michel, Misztal, Ignacy, Herring, William, Legarra, Andrès

Journal:

Genetics Selection Evolution

Year:

2016

Language:

english

File:

PDF, 1.22 MB

english, 2016

42

Dominance and epistatic genetic variances for litter size in pigs using genomic models

Vitezica, Zulma G., Reverter, Antonio, Herring, William, Legarra, Andres

Journal:

Genetics Selection Evolution

Year:

2018

Language:

english

File:

PDF, 1.03 MB

english, 2018

43

Searching for genes of interest in Sheep

Moreno, Carole R., Elsen, Jean-Michel, Legarra, Andrès, Rupp, Rachel, Bouix, J., Barillet, François, Palhiere, Isabelle, Larroque, Hélène, Allain, Daniel, Francois, Dominique, Robert, Christele, Tosse

Journal:

Advances in Animal Biosciences

Year:

2010

Language:

english

File:

PDF, 26 KB

english, 2010

44

Erratum to: Incorporation of causative quantitative trait nucleotides in single-step GBLUP

Fragomeni, Breno O., Lourenco, Daniela A. L., Masuda, Yutaka, Legarra, Andres, Misztal, Ignacy

Journal:

Genetics Selection Evolution

Year:

2017

Language:

english

File:

PDF, 689 KB

english, 2017

45

Effects of ignoring inbreeding in modelâbased accuracy for BLUP and SSGBLUP

Aguilar, Ignacio, Fernandez, Eduardo N., Blasco, Agustin, Ravagnolo, Olga, Legarra, Andres

Journal:

Journal of Animal Breeding and Genetics

Year:

2020

Language:

english

File:

PDF, 1.24 MB

english, 2020

46

The effects of selective breeding against scrapie susceptibility on the genetic variability of the Latxa Black-Faced sheep breed

Leopoldo Alfonso, Analia Parada, Andrés Legarra, Eva Ugarte, Ana Arana

Journal:

Genetics Selection Evolution

Year:

2006

Language:

english

File:

PDF, 133 KB

english, 2006

47

Joint genomic evaluation of French dairy cattle breeds using multiple-trait models

Sofiene Karoui, María Jesús Carabaño, Clara Díaz, Andrés Legarra

Journal:

Genetics Selection Evolution

Year:

2012

Language:

english

File:

PDF, 364 KB

english, 2012

48

Validation of singleâstep GBLUP genomic predictions from threshold models using the linear regression method: An application in chicken mortality

Bermann, Matias, Legarra, Andres, Hollifield, Mary Kate, Masuda, Yutaka, Lourenco, Daniela, Misztal, Ignacy

Journal:

Journal of Animal Breeding and Genetics

Year:

2020

File:

PDF, 563 KB

2020

49

Pedigree and genomic evaluation of pigs using a terminal-cross model

Tusell, Llibertat, Gilbert, Hélène, Riquet, Juliette, Mercat, Marie-José, Legarra, Andres, Larzul, Catherine

Journal:

Genetics Selection Evolution

Year:

2016

Language:

english

File:

PDF, 1.96 MB

english, 2016

50

Fine mapping of QTL and genomic prediction using allele-specific expression SNPs demonstrates that the complex trait of genetic resistance to Marek’s disease is predominantly determined by transcriptional regulation

Cheng, Hans H., Perumbakkam, Sudeep, Pyrkosz, Alexis Black, Dunn, John R., Legarra, Andres, Muir, William M.

Journal:

Year:

2015

Language:

english

File:

PDF, 949 KB

english, 2015

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